Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGEGFEEETVDGRKCRSLPTWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE
1FDQ Chain:A ((1-131))
VEAFCATWKLTNSQNFDEYMKALGVGFATRQVG--NVTKPTVIISQEGDKVVIRTLSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQ----KWDGKETNFVREIKDGKMVMTLTFGDVVAVRHYEKA
General information:
TITO was launched using:
RESULT:
Template:
1FDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29918 for 913 contacts (-32.8/contact) +
2D Compatibility (PS) -14554 + (NN) -5880 + (LL) 860
1D Compatibility (HY) -10800 + (ID) 2550
Total energy: -62842.0 ( -68.83 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_1FDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FDQ-query.scw
PDB file :
Tito_Scwrl_1FDQ.pdb
: