Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRKTPVEKKKPKKKSCLLL
2FN4 Chain:A ((8-175))
-ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQE--------------
General information:
TITO was launched using:
RESULT:
Template:
2FN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100280 for 1383 contacts (-72.5/contact) +
2D Compatibility (PS) -18348 + (NN) -6476 + (LL) 1360
1D Compatibility (HY) -16800 + (ID) 4250
Total energy: -144794.0 ( -104.70 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_2FN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FN4-query.scw
PDB file :
Tito_Scwrl_2FN4.pdb
: