Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMKNYLLPILVLFLAYYYYSTNEEFRPEMLQGKKVIVTGASKGIGREMAYHLSKMGAHVVLTARSEEGLQKVVSRCLELGAASAHYIAGTMEDMTFAEQFIVKAGKLMGGLDMLILNHITQTSLSLFHDDIHSVRRVMEVNFLSYVVMSTAALPMLKQSNGSIAVISSLAGKMTQPMIAPYSASKFALDGFFSTIRTELYITKVNVSITLCVLGLIDTETAMKEISGIINAQASPKEECALEIIKGTALRKSEVYYDKSPLTPILLGNPGRKIMEFFSLRYYNKDMFVSN
3D3E Chain:C ((18-275))
-----------------------NEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIV--QAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYS-----------
General information:
TITO was launched using:
RESULT:
Template:
3D3E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175519 for 2138 contacts (-82.1/contact) +
2D Compatibility (PS) -27659 + (NN) -7522 + (LL) 3312
1D Compatibility (HY) -36400 + (ID) 10350
Total energy: -254138.0 ( -118.87 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_3D3E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D3E-query.scw
PDB file :
Tito_Scwrl_3D3E.pdb
: