Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
1F1J Chain:A ((60-304))
-----------YQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDGIQ-------------------------KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYFS----
General information:
TITO was launched using:
RESULT:
Template:
1F1J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167389 for 1894 contacts (-88.4/contact) +
2D Compatibility (PS) -24238 + (NN) -5445 + (LL) 2340
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -214132.0 ( -113.06 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1F1J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F1J-query.scw
PDB file :
Tito_Scwrl_1F1J.pdb
: