Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
3IPY Chain:A ((1-241))
-------------------RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCN----------------NGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL
General information:
TITO was launched using:
RESULT:
Template:
3IPY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124979 for 1755 contacts (-71.2/contact) +
2D Compatibility (PS) -23686 + (NN) -5647 + (LL) 1740
1D Compatibility (HY) -35200 + (ID) 11200
Total energy: -198972.0 ( -113.37 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3IPY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IPY-query.scw
PDB file :
Tito_Scwrl_3IPY.pdb
: