Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
3FDM Chain:C ((32-147))
----------------------------------------------------------------------------------MAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNN-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3FDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82292 for 756 contacts (-108.9/contact) +
2D Compatibility (PS) -12628 + (NN) -4397 + (LL) 6376
1D Compatibility (HY) -17600 + (ID) 5800
Total energy: -116341.0 ( -153.89 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_3FDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FDM-query.scw
PDB file :
Tito_Scwrl_3FDM.pdb
: