Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTKPLQGPPAPPGTPTPPPGGKDREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQT---PAEDVPLNPSKGGPAPLAWSLLP
3CY3 Chain:A ((34-306))
--------------------------PLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELP--TRVPMEVVLLKKVSSG--FSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIGGQVFFRQRVS-ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLH-------------
General information:
TITO was launched using:
RESULT:
Template:
3CY3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168894 for 2171 contacts (-77.8/contact) +
2D Compatibility (PS) -28556 + (NN) -16694 + (LL) -1056
1D Compatibility (HY) -28000 + (ID) 7300
Total energy: -250500.0 ( -115.38 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_3CY3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CY3-query.scw
PDB file :
Tito_Scwrl_3CY3.pdb
: