Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEDFLLSNGYQLGKTIGEGTYSKVKEAFSKKHQRKVAIKVIDKMGGPEEFIQRF-LPRELQIVRTLDHKNIIQVYEMLESADGKICLVMELAEGGDVFDCVLNGGPLPESRAKALFRQMVEAIRYCHGCGVAHRDLKCENALLQGFN----LKLTDFGFAKVLPKSHRELSQTFCGSTAYAAPEVL--QGIPHDSKKGDVWSMGVVLYVMLCASLPFDDTDIPKMLWQQQKGVSF----PTHLSISADCQDLLKRLLEPDMILRPSIEEVSWHPWLAST
2YIT Chain:A ((8-278))-----LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISK----------LNVETEIEILKKLNHPCIIKIKNFFDAEDYYI--VLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETS--LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDE


General information:
TITO was launched using:
RESULT:

Template: 2YIT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136747 for 1780 contacts (-76.8/contact) +
2D Compatibility (PS) -26431 + (NN) -12697 + (LL) 1468
1D Compatibility (HY) -20800 + (ID) 4850
Total energy: -200057.0 ( -112.39 by residue)
QMean score : 0.427

(partial model without unconserved sides chains):
PDB file : Tito_2YIT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2YIT-query.scw
PDB file : Tito_Scwrl_2YIT.pdb: