Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKKVKLGILISGRGSNMQALMKACQNYGFPAEMACVISNNNKAAGLKVAEQAGMPTFVVENKPLDVDKIHEILVQHEVNL-----VCLAGFMRILKADFLNKWHGKVINVHPSLLPSFKGLNAQEQALKAGVKVTGCTVHYVTSEVDAGAIIAQAAVPVLPNDDIHSLSKRILSEEHKCYVEAVRLIAMLSRKLERP
1C2T Chain:A ((5-177))
--------VLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLVISWFADGRLKMHEN
General information:
TITO was launched using:
RESULT:
Template:
1C2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112333 for 1278 contacts (-87.9/contact) +
2D Compatibility (PS) -19187 + (NN) -14676 + (LL) 804
1D Compatibility (HY) -14000 + (ID) 3400
Total energy: -162792.0 ( -127.38 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1C2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C2T-query.scw
PDB file :
Tito_Scwrl_1C2T.pdb
: