Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLPKHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNY-------NIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
4U82 Chain:A ((19-251))
-LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNL---------PVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGG
General information:
TITO was launched using:
RESULT:
Template:
4U82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131060 for 1721 contacts (-76.2/contact) +
2D Compatibility (PS) -23239 + (NN) -1636 + (LL) 784
1D Compatibility (HY) -18000 + (ID) 4450
Total energy: -177601.0 ( -103.20 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_4U82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U82-query.scw
PDB file :
Tito_Scwrl_4U82.pdb
: