Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELKNVYRTFK-NGDKNIRVLKDINIHINAGEFIAIMGPSGSGKSTLINILGFIDREYHGEYLFEGSNYQTQSDNQLANIRNKTVGFVFQN-FKLIHNNTILENISMPLVYTNMNTIERKNKVMTVLSAVGLDGKGDFTPSKLSGGQQQRVAIARAIINNPKFIIADEPTGALDSDTSKIIMDIFTSLNRDNHTTIILVTHDRKVAEKADRIIHILDGRIQHEEVIK
4HLU Chain:C ((12-217))
-IELNSV--SFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFLDGS----PADPFLLR---KNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL-KNEGKGIILVTHELEYLDDMDFILHISNGTI-------
General information:
TITO was launched using:
RESULT:
Template:
4HLU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135565 for 1627 contacts (-83.3/contact) +
2D Compatibility (PS) -22728 + (NN) -10729 + (LL) 1672
1D Compatibility (HY) -17600 + (ID) 3950
Total energy: -188900.0 ( -116.10 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4HLU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HLU-query.scw
PDB file :
Tito_Scwrl_4HLU.pdb
: