Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEE--------GNDIVGFANFIYG------EELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKF-EGVYLEVDNKNEEAVAYYKEQGFTILRSYQPEMYGEKLDLALMYKAF
2B5G Chain:A ((3-151))
KFVIRPATAADCSDILRLIKELAKYE----QVILTEKDLLE-----DGFGEH-PFYHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKLLYLEDFFVMSDYRGFGIGSEILKNLSQVAMRCRCSSMHFLVAEWNEPSINFYKRRGASDLSSE------------------
General information:
TITO was launched using:
RESULT:
Template:
2B5G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53356 for 853 contacts (-62.6/contact) +
2D Compatibility (PS) -13974 + (NN) -2808 + (LL) 2416
1D Compatibility (HY) -6800 + (ID) 1700
Total energy: -76222.0 ( -89.36 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2B5G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B5G-query.scw
PDB file :
Tito_Scwrl_2B5G.pdb
: