Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLKNSKKEGTFSLEERMDLIEQSVKHLPNVKV-HQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
3ND7 Chain:E ((4-158))
----IALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK--
General information:
TITO was launched using:
RESULT:
Template:
3ND7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99621 for 1081 contacts (-92.2/contact) +
2D Compatibility (PS) -15542 + (NN) -2068 + (LL) 556
1D Compatibility (HY) -14000 + (ID) 3350
Total energy: -134025.0 ( -123.98 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3ND7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND7-query.scw
PDB file :
Tito_Scwrl_3ND7.pdb
: