Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK
4F8M Chain:A ((9-135))
---------------------------------------------KEPATLIKAIDGDTIKLMYKGQPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYVY-ADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS-
General information:
TITO was launched using:
RESULT:
Template:
4F8M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2427 for 972 contacts (-2.5/contact) +
2D Compatibility (PS) -13397 + (NN) -5186 + (LL) 3536
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: -29524.0 ( -30.37 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4F8M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F8M-query.scw
PDB file :
Tito_Scwrl_4F8M.pdb
: