Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------MDTKQLK-QDIIDYAYTIGIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRG------DRRGLFARASWGQDYHTIMRKRLDMLAAFIESKVPDVEIKSMVDT----GVLSDRAVAERAGLGFVGRNG----FVINPKLGTW-------------TYLGEMLVSIPFE------PDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQTKGYMPDQYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIILEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE |
| 3J9Q Chain:A ((2-386)) | SFFHGVTVTNVDIGARTIALPASSVIGLCDVFTPGAQASAKPNVPVLLTSKKDAAAAFGIGS-----SIYLACEAIYNRAQAV-IVAVGVETAETPEAQASAVIGGISAAGERTGLQALLDGKSRFNA--QPRLLVAPGHSAQQAVATAMDGLAEKLRAIAILDGPNSTDEAAVAYAKNFGSKRLFMVDPGVQVWDSATNAARNAPASAYAAGLFAWTDAEYGFWSSPSNKEIKGVTGTSRPVEFLDGDETCRANLLNNANIATIIR------DDGYRLW-GNRTLSSDSKWAFVTRVRTMDLVMDAILAGHKWAVDR-----GITKTYVKDVTEGLRAFMRDLKN--QGAVINF----EVYADPDL-----NSASQLAQGKVYWNIRFTDVPPAE---NPNFRVEVTDQWLTEVLDVA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3J9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48628 for 2591 contacts (-18.8/contact) +
2D Compatibility (PS) -35056 + (NN) -4041 + (LL) 3368
1D Compatibility (HY) -9600 + (ID) 3200
Total energy: -97157.0 ( -37.50 by residue)
QMean score : 0.098
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