Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGYL-NISHLATSLFVPLIEESILEGELLETCMHYYFTPL-EILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACT--FPKVEFHASGDVIWLERQAKEWLKL
2DWU Chain:A ((8-256))
SVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKV--TKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELG------EDVTIISSAEETAIELSTILQHKGILADNLNPKHRFFTTGSVSSFEHIAERWLGY
General information:
TITO was launched using:
RESULT:
Template:
2DWU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -224121 for 2203 contacts (-101.7/contact) +
2D Compatibility (PS) -25968 + (NN) -9055 + (LL) 480
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -275764.0 ( -125.18 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_2DWU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DWU-query.scw
PDB file :
Tito_Scwrl_2DWU.pdb
: