Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAVITGASSGIGLECVLMLLNQGYKVYALSRHATLCVA----L--NHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFENDERKDSVYALEVNAAKSFYSGVYQKALNAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA
3GAF Chain:A ((13-253))VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEI---------ERAMLK--HTPLGRLGEAQDIANAALFLCSP---AAAWISGQVLTVSGGGVQE---------------------


General information:
TITO was launched using:
RESULT:

Template: 3GAF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173462 for 2002 contacts (-86.6/contact) +
2D Compatibility (PS) -25225 + (NN) -10323 + (LL) 2836
1D Compatibility (HY) -6400 + (ID) 2650
Total energy: -215224.0 ( -107.50 by residue)
QMean score : 0.483

(partial model without unconserved sides chains):
PDB file : Tito_3GAF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3GAF-query.scw
PDB file : Tito_Scwrl_3GAF.pdb: