Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNSIKD---LK----GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
4P8R Chain:B ((11-333)) | IRVGINGFGRIGRVVFRAAQRRND----IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVEVQGGALVVNGKKIRV-TSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGP-----SKDDTPMFVMGVNHTTYKGEAIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHATTATQKTVDGPSQKDWRGGRGAAQNIIPSSTGAAKAVGKIIPSLNGKLTGMAFRVPTPNVSVVDLTVRLERPATYKQICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAGISLNDNFVKLVSWYDNETGYSNKVLDLIAHITK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P8R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213464 for 2702 contacts (-79.0/contact) +
2D Compatibility (PS) -33505 + (NN) -4853 + (LL) 592
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -282180.0 ( -104.43 by residue)
QMean score : 0.498
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