Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2YMM Chain:A ((98-234))
-----------------------------TSMPAYPDVAPALTRLQDAGFRLVTLTNSAPS---PAPSPLEKAGIASFFEAHLTVHSS----QRFKPHPSVYDSTAETLGAKPEELCMIACHI-WDTIGAQARGWRGGFVARPHNTPLTL-AEVPQPDFIGR--DMGELADQLIASL----
General information:
TITO was launched using:
RESULT:
Template:
2YMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64871 for 989 contacts (-65.6/contact) +
2D Compatibility (PS) -14515 + (NN) -6665 + (LL) 2500
1D Compatibility (HY) -1600 + (ID) 1500
Total energy: -86651.0 ( -87.61 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2YMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YMM-query.scw
PDB file :
Tito_Scwrl_2YMM.pdb
: