Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGD-ETLVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
1TMH Chain:D ((1-252))
MRHPLVMGNWK-LNGSRHMVHELVSNLRKELAGVAGCAVAIAPPEMYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQHDVDGFLVGGASLKPE-FVDIINAAEAAK-
General information:
TITO was launched using:
RESULT:
Template:
1TMH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139260 for 2209 contacts (-63.0/contact) +
2D Compatibility (PS) -27218 + (NN) -11601 + (LL) -332
1D Compatibility (HY) -11600 + (ID) 4200
Total energy: -194211.0 ( -87.92 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_1TMH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMH-query.scw
PDB file :
Tito_Scwrl_1TMH.pdb
: