Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------MSDKLSQEQIDALLSQMSE-GKVVDESTEIGDFGRFHPYDFHKPEKFGAEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASG-------YIETMPNDSYIFCI---------------IDLGNPELGQIIIELDLAYIIYIHEC-----LSGGNPKRKLSERRLLSVFEELTLKSILEKFCEALKDSFKSVHPISPEIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLE--VGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQER------------------- |
| 3MDD Chain:A ((1-385)) | GFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESFGGLG---LGIIDSCLITEELAYGCTGVQTAIEANT-LGQVPLIIGGNYQQQKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKG-DEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALE--RKTFGKLLAEHQGISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MDD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38369 for 2783 contacts (-13.8/contact) +
2D Compatibility (PS) -33649 + (NN) -6455 + (LL) 892
1D Compatibility (HY) 400 + (ID) 1900
Total energy: -79081.0 ( -28.42 by residue)
QMean score : 0.140
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