Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MVVKQKADYAALKEELIAYAYEIGIQKIGFTTADPFLFLKERLLEAEALDL---------FTGFEHPVIEERVYPELIFKEPQSIIAIALAYPSKLKEAPVSKKGARRGVFARASWGIDYHTVLREKLALLETFLIERLPDVRMKSMVDTGELSDVAVAERAGIGWRGKNTLLITPEYGSWVYLGEMITNIP--FEPDTPASDLCGSCNQCVKACPTGSLLGEGKMNPKICLSYLTQTKDFLDEKYREV----------LHNRLYGCD-TCQVVCPYNRGHDFHFHEEMEPDPELVRPELKPLLHISNRAFKEQFGDMAGSWRGKKPIQRNAIIILARYKDKTAVP--DLIDCLQNDPRPVIRGTA------GWALRKI-GGRDAEEAVERALQTEQDVQVLQELTAIPN-------- |
| 4R2F Chain:A ((38-431)) | GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQII-QWNNFYQTFSSAIASKTGPAVSTGGGFQAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKTSKG------YVAVPWQLDIRPLWYRK-SLFEKAGVGVPTD--WASLLEAGKKLKGVGAVGFATGSGAGNN------IGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFLL--ELVSNGVIDPA-AVSY---TTDNLNAQWKDSKAAYGMLTLGVPERVGDTSGDIVVASPIAGPHGDKAALIFPNNIMMYTNT--PSQEASEEFVVYYLGKLKELWQQKLM---NALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALSANLAALDGGQALNQFTQTVLTGKTD--AKSALTAFDTGLKSVLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34425 for 2791 contacts (-12.3/contact) +
2D Compatibility (PS) -36899 + (NN) -8562 + (LL) 2564
1D Compatibility (HY) -5600 + (ID) 3000
Total energy: -85922.0 ( -30.79 by residue)
QMean score : 0.224
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