Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEI-KIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNP-DVIIRSLMSFVSGQ--EDKDIPDPYYTG--DFDETERMVTEGVKALLAYITKK
1D1Q Chain:A ((8-160))
-ISVAFIALGNFCRSPMAEAIFKHEVEKANLENRFNKIDSFGTSNYHVGESPDHRTVSICKQHGVKI-NHKGKQIKTKHFDEYDYIIGMDESNINNLKKIQPEGSKAKVCLFGDWNTNDGTVQTIIEDPWYGDIQDFEYNFKQITYFSKQFLKKE---
General information:
TITO was launched using:
RESULT:
Template:
1D1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69565 for 1232 contacts (-56.5/contact) +
2D Compatibility (PS) -16144 + (NN) -9488 + (LL) 476
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -108371.0 ( -87.96 by residue)
QMean score : 0.609
(partial model without unconserved sides chains):
PDB file :
Tito_1D1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D1Q-query.scw
PDB file :
Tito_Scwrl_1D1Q.pdb
: