Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKAT--RNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMG------DGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
2JFZ Chain:A ((1-254))
--MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGYL-NISHLATSLFVPLIEESILEGELLETCMHYYFTPL-EILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNAC---TFPKVEFHASGDVIWLERQAKEWLK-------------
General information:
TITO was launched using:
RESULT:
Template:
2JFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191618 for 2183 contacts (-87.8/contact) +
2D Compatibility (PS) -25880 + (NN) -4823 + (LL) 1560
1D Compatibility (HY) -20400 + (ID) 4000
Total energy: -245161.0 ( -112.30 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_2JFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFZ-query.scw
PDB file :
Tito_Scwrl_2JFZ.pdb
: