Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPIVVGVTGGSGSGKTSVTKAICNHFSGH-------SILMIAQDVYYHDQANISFE--DRLKVNYDHPLAFDTDLLISHIAALRRYESIEKPIYDYAKYTRKKEVEIQEPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQYLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV
1UJ2 Chain:A ((21-232))
---EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN---
General information:
TITO was launched using:
RESULT:
Template:
1UJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99577 for 1598 contacts (-62.3/contact) +
2D Compatibility (PS) -21699 + (NN) -7263 + (LL) 624
1D Compatibility (HY) -20400 + (ID) 3900
Total energy: -152215.0 ( -95.25 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ2-query.scw
PDB file :
Tito_Scwrl_1UJ2.pdb
: