Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIELDL---PAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDAILEYV-KNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL
3G00 Chain:B ((4-251))
LKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGNFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSD-PGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPI------
General information:
TITO was launched using:
RESULT:
Template:
3G00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123414 for 1965 contacts (-62.8/contact) +
2D Compatibility (PS) -26413 + (NN) -12271 + (LL) 832
1D Compatibility (HY) -22800 + (ID) 5750
Total energy: -189816.0 ( -96.60 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3G00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G00-query.scw
PDB file :
Tito_Scwrl_3G00.pdb
: