Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDVLTLLRNHRSFRKYKKGVEIPEEKLDAIIRAAQAAPSWINGQHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAGE------EDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAGFLNL-PEFVMPVVGLCIGVPD-VEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERLAKFYDRPYYPNLTEQIKERGFLGGK
1BKJ Chain:A ((2-240))
-NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINP-----------DVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLG-LPENSAVLFGMCLGHPDQ-NPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYS-----TWSQEVTGKLAGESRPHILPYLNSKGLAKR-
General information:
TITO was launched using:
RESULT:
Template:
1BKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139737 for 1538 contacts (-90.9/contact) +
2D Compatibility (PS) -24872 + (NN) -13716 + (LL) 1472
1D Compatibility (HY) -12400 + (ID) 3550
Total energy: -192803.0 ( -125.36 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1BKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BKJ-query.scw
PDB file :
Tito_Scwrl_1BKJ.pdb
: