Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNHSKIAKKHQQMPVNILADIGTLAKT----MPDILDLSIGDPDLITDESIINAAFEDVRAG-HTKYTESGGDVELIDAIRGYFSRNYDLSFE-RSQIRATVGALHGMYLTLQTILDDGDEVIIHEPYFSPYKDQVLNSGGTPIIIPTYEKDDFAINVDILEAAITDKTKALILNSPNNPTGAVFSPETFEKIANLAKKYDFFILSDEVYDGFSFYEDFVPMAKF-A-PDHTITFGSMSKNFAMTGWRLGYMIAPTYLNEAAKIINEGITYSAPTPSQRAAIYALNHSETLIPLVAETFQKRLEYIAKRVEKIPYLSLHPLKGSIYAFINISKTNMDSVSFTEYVLKETQVLVIPGLAFGESGDNYVRLAATQDISVLEEAFNRLAKLTF |
1O4S Chain:A ((14-386)) | -----VSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEV-KYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD---NSYMVQTFKERKNFVVERLKKM-GVKFVEPEGAFYLFFKVRG---DDVKFCERLLEEKKVALVPGSAFLK--PGFVRLSFATSIERLTEALDRIEDFL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O4S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -213924 for 3185 contacts (-67.2/contact) +
2D Compatibility (PS) -39739 + (NN) -21949 + (LL) 536
1D Compatibility (HY) -28000 + (ID) 5750
Total energy: -308826.0 ( -96.96 by residue)
QMean score : 0.574
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