Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENF---VTHSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
4TOT Chain:B ((18-145))
-----------------------GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK---------------------------TDWLDGKHVVFGHVIEGMDVVKKIESF--------------------
General information:
TITO was launched using:
RESULT:
Template:
4TOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47545 for 910 contacts (-52.2/contact) +
2D Compatibility (PS) -13316 + (NN) -7383 + (LL) 4668
1D Compatibility (HY) -10000 + (ID) 3550
Total energy: -77126.0 ( -84.75 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_4TOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TOT-query.scw
PDB file :
Tito_Scwrl_4TOT.pdb
: