Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
4JI8 Chain:L ((5-122))
-PTINQLVRKGREKVRKKSKVPALK-------------GAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLWGVRYHIVRGVYDAAGVKDRKKSRSKYGT-----
General information:
TITO was launched using:
RESULT:
Template:
4JI8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22525 for 797 contacts (-28.3/contact) +
2D Compatibility (PS) -12897 + (NN) -6728 + (LL) 1028
1D Compatibility (HY) -11200 + (ID) 4450
Total energy: -56772.0 ( -71.23 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4JI8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JI8-query.scw
PDB file :
Tito_Scwrl_4JI8.pdb
: