Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRAAVLYENNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKMQTRW----KYPLPAVMGHEFAGVITEIGSEVTNVAMGDRVAGIPLEPCMECNYCKAGDFALCDNYRMVGS-HFHGGFAENVVMKADNVISI-GDLDFEEGAMIEPLAVSMHGVLGIQPRLGDTVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTI--NPKNE---DLKERVFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFRRELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSREHDYNKVMILPQKGDD |
| 1E3J Chain:A ((5-351)) | NLSAVLYKQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI-GDLPNVTIDCSGNEKCITIGINITRTGGTLMLV-GMGSQM--VTVPLVNACAREIDIKSV---F-R--YCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E3J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261908 for 3020 contacts (-86.7/contact) +
2D Compatibility (PS) -35777 + (NN) -8950 + (LL) -288
1D Compatibility (HY) -19200 + (ID) 4950
Total energy: -331073.0 ( -109.63 by residue)
QMean score : 0.442
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