Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAIFITLEGPDGSGKTTVGTLLNQKMTE-AGID-FIKTREPGGSPISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKSVLCDRFMDSSLAYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKEDITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA
3LD9 Chain:D ((21-197))
--SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFK--AQGLDSLSELLFFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVI-DVYPDITFIIDVD----------------------DMEFYYRVRDGFYDIAKKNPHR--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3LD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26125 for 1171 contacts (-22.3/contact) +
2D Compatibility (PS) -17000 + (NN) -9587 + (LL) 4800
1D Compatibility (HY) -16400 + (ID) 3150
Total energy: -67462.0 ( -57.61 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3LD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD9-query.scw
PDB file :
Tito_Scwrl_3LD9.pdb
: