Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSPEYMLSHTCLVREPEKFYQFVTENM-YYPNAVPNVIHKKMAEIETE-KDVTIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVTAKDYL----K-S-DIHTDCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYR-NKKARIFAVNKERISLPYPFEMMESDAV-KVFEEI
1YC5 Chain:A ((3-238))
MKEFLDLLNESRLTVTLTGAGISTPSGIPDF-------------QNVFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARR-
General information:
TITO was launched using:
RESULT:
Template:
1YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129491 for 1774 contacts (-73.0/contact) +
2D Compatibility (PS) -23109 + (NN) -7206 + (LL) 340
1D Compatibility (HY) -17600 + (ID) 3300
Total energy: -180366.0 ( -101.67 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_1YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC5-query.scw
PDB file :
Tito_Scwrl_1YC5.pdb
: