Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------MEITIVKGDITEQEVDVIVNAANSGLLGGGGVDGAIHQAAGPDLLKECQEVINRIGSCPAGEAVITSAGDLKATYIIHAVGPIWKDG-EHQEANKLASCYWKALDLAAGKDLTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIKEIRFVCFDEENLKLYNKLINSEVV--
2X47 Chain:A ((1-235))
TSTDWKEAKSFLKGLSDKQREEHYFCKDFVRLKKIPTWKEMAKGVARYKKDKQLNEKISLLRSDITKLEVDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECR----TLQSCKTGKAKITGGYRLPAKYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDK-VDRLIICVFLEKDEDIYRSRLPHYFPVA
General information:
TITO was launched using:
RESULT:
Template:
2X47.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125491 for 1419 contacts (-88.4/contact) +
2D Compatibility (PS) -19096 + (NN) -13651 + (LL) 392
1D Compatibility (HY) -15200 + (ID) 3950
Total energy: -176996.0 ( -124.73 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2X47.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X47-query.scw
PDB file :
Tito_Scwrl_2X47.pdb
: