Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLSVESRATSTWEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCDG----GVPDPWYTG--DFEETYRLVNDGCKQWLTLINNSRD
2FEK Chain:A ((2-145))
FNNILVVCVGNICRSPTAERLLQRYH--PELKVESAGLGAL-VGKGADPTAISVAAEHQLSLEGHC-ARQISRRLCRNYDLILTMEKRHIERLCEMAPE-MRGKVMLFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV
General information:
TITO was launched using:
RESULT:
Template:
2FEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93172 for 1159 contacts (-80.4/contact) +
2D Compatibility (PS) -15028 + (NN) -6246 + (LL) 152
1D Compatibility (HY) -11200 + (ID) 1750
Total energy: -127244.0 ( -109.79 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_2FEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FEK-query.scw
PDB file :
Tito_Scwrl_2FEK.pdb
: