Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENAPE-AKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTLDK--SYDFVFMDSAKSKYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVRRGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
4PCA Chain:A ((6-226))
---------HHHMRNVSLSKQDEYLNKLFAVDTEGALKAHKTAPSELRMAQLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDE-HPTEKVSSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT-------
General information:
TITO was launched using:
RESULT:
Template:
4PCA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110707 for 1812 contacts (-61.1/contact) +
2D Compatibility (PS) -23731 + (NN) -13864 + (LL) 1636
1D Compatibility (HY) -11600 + (ID) 2500
Total energy: -160766.0 ( -88.72 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_4PCA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PCA-query.scw
PDB file :
Tito_Scwrl_4PCA.pdb
: