Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVYLSLGSNIGDRETFLKQALFSIDHLQKTKVAQISAIYETAAWGNTNQEDFFNICCQVETDLAPFELLDYCQEIEKRLKRVRHEHWGPRTIDIDILLFGNQVINQEDLVVPHPYMTKRAFVLVPLLEIAPQLSLPNGSKLEDYL-----EKLNLGEVHYLKPVE
1RU2 Chain:A ((1-150))
-TVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPP------PDYLNAAVALETSLAPEELLNHTQRIELQQGR-----GGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW---------
General information:
TITO was launched using:
RESULT:
Template:
1RU2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135971 for 1081 contacts (-125.8/contact) +
2D Compatibility (PS) -14657 + (NN) -5488 + (LL) 1224
1D Compatibility (HY) -12800 + (ID) 3050
Total energy: -170742.0 ( -157.95 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_1RU2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RU2-query.scw
PDB file :
Tito_Scwrl_1RU2.pdb
: