Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTNRKDDHIKYALKYQS-PYNSFDDIELIHSSLPKYNVNDIDLSTHFAGQSFEFPFYINAMTGGSEKGKAVNHKLAQVAQATGIVMATGSYSAALKNDEDDS-YP-TT-DLYPDLKLATNIGLDKP----LPAAESTVKAMNPIFLQVHVNVMQELLMPEGEREFHMWRSHLKEYVDNI--QCPLILKEVGFGMDLQSIKDAYDIGITTVDISGRGGTSFAYIENQRGRDRSYLNTWGQTTAQSLINAQSMMDKMDILASGGIRHPLDMVKCLVLGAKAVGLSRTVLELVERYPVDDVIAILNSWKEDLRMIMCALNCKKITDLRQVNYILYGQLKEANAK |
| 1VCF Chain:A ((23-329)) | -----------------KTTTGLEGFRLRYQALAGLALSEVDLTTPFLGKTLKAPFLIGAMT---ENGERINLALAEAAEALGVGMMLGSGRIL--LERPEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQR-GDT---DFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWV-----ELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEELRTALFAIGARNPKEARGRVERV---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VCF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197044 for 2551 contacts (-77.2/contact) +
2D Compatibility (PS) -31020 + (NN) -14874 + (LL) 2440
1D Compatibility (HY) -12000 + (ID) 3850
Total energy: -256348.0 ( -100.49 by residue)
QMean score : 0.500
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