Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQ----EIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
3V9P Chain:A ((25-211))
--GKFITFEGID---KTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQP---MDLETEALLMFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGA--VRMP---ESESDAFFARTRAEYLRRAQEAPHRFVIVDSSE----------------------
General information:
TITO was launched using:
RESULT:
Template:
3V9P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58786 for 1280 contacts (-45.9/contact) +
2D Compatibility (PS) -19893 + (NN) -13863 + (LL) 2592
1D Compatibility (HY) -6800 + (ID) 3600
Total energy: -100350.0 ( -78.40 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_3V9P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9P-query.scw
PDB file :
Tito_Scwrl_3V9P.pdb
: