Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLG-TSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
1RYB Chain:A ((3-190))
PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKG-----ERFNLV-
General information:
TITO was launched using:
RESULT:
Template:
1RYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123737 for 1533 contacts (-80.7/contact) +
2D Compatibility (PS) -19337 + (NN) -5766 + (LL) 1004
1D Compatibility (HY) -16400 + (ID) 3900
Total energy: -168136.0 ( -109.68 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1RYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYB-query.scw
PDB file :
Tito_Scwrl_1RYB.pdb
: