Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNIAYIALGSNIGDRETYLRQAVALLHQHAAVTVTKVSSIYETDPVGYEDQAQFLNMAVEIKTSLNPFELLELTQQIENELGRTREV-RWGPRTADLDILLFNRENIETEQLIVPHPRMYERLFVLAPLAEICQQVEKEATSAETDQEGVRVWKQKSGVDEFVHSES
1TMM Chain:A ((2-135))
---VAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPEL-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1TMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98106 for 1011 contacts (-97.0/contact) +
2D Compatibility (PS) -13845 + (NN) -3088 + (LL) 2088
1D Compatibility (HY) -8800 + (ID) 3150
Total energy: -124901.0 ( -123.54 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1TMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMM-query.scw
PDB file :
Tito_Scwrl_1TMM.pdb
: