Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSG------SSNSVLYISGEES--VKQTKLRADRLGIN----NPSLHVLSETDME-------YISSAIQEMNPSFVVVDSIQTVYQSDITS--APGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEAAKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSLGG |
| 3LDA Chain:A ((156-396)) | --------------------------------------------------------------------ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-----GELSARQMHLAKFMRALQRLADQFGVAVVVTNQV---------NIMAYSSTTRLGFKKGK-GCQRLCKVVDSPCLPE-AECVFAIYEDGVGDPR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107419 for 1621 contacts (-66.3/contact) +
2D Compatibility (PS) -20904 + (NN) -6545 + (LL) 15916
1D Compatibility (HY) -9600 + (ID) 2000
Total energy: -130552.0 ( -80.54 by residue)
QMean score : 0.526
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