Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
3IKF Chain:C ((7-162))
-FRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHF----------DSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR-
General information:
TITO was launched using:
RESULT:
Template:
3IKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119798 for 1257 contacts (-95.3/contact) +
2D Compatibility (PS) -15710 + (NN) -6093 + (LL) 24
1D Compatibility (HY) -14000 + (ID) 4450
Total energy: -160027.0 ( -127.31 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_3IKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IKF-query.scw
PDB file :
Tito_Scwrl_3IKF.pdb
: