Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR
3A1P Chain:B ((9-91))
--------VFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKATK-
General information:
TITO was launched using:
RESULT:
Template:
3A1P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43083 for 510 contacts (-84.5/contact) +
2D Compatibility (PS) -9213 + (NN) -4952 + (LL) 656
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -69192.0 ( -135.67 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_3A1P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A1P-query.scw
PDB file :
Tito_Scwrl_3A1P.pdb
: