Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNEVIKSLTDHRSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQVTVITVQDKERKKKISELA--------------GGQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPKYVFPLSGLVIGHPADRS-AKKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREMLEKQGFKVEK
4DN2 Chain:A ((23-207))-METLEAIRTRRSVRKFSDRPVEPEKLRAVLDAARLAPSWANMQCWRFVVVEDQATKVQISELSYVEAYFGPKGYKSNPAQKALAEAPVVIIACGEPPQSGE---------------LRGQQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVF--DEQQLGELLGIPAELRIVGLFPLGYPLEGPKAGPSRKPLDEIVHYGKYQ-------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4DN2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 785 -113454 -144.53 -667.38
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -144.53
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.612

(partial model without unconserved sides chains):
PDB file : Tito_4DN2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DN2-query.scw
PDB file : Tito_Scwrl_4DN2.pdb: