Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSNTELELLRQKADELNLQILKLINERGNVVKEIGKAKEAQGVNRFDPVRERTMLNNIIENNDGPFENSTIQHIFKEIFKAGLELQEEDHSKALLVSRKKKPEDTIVDIKGEKIGDGQQRFIVGPCAVESYEQVAEVAAAAKK-----QGIKILRGGAFKP--RTSPYDFQGLGVE-GLQILKRVADEFDLAVISEIVTPAHIEEALDYIDVIQIGARNMQNFELLKAAGAVKKPVLLKRGLAATISEFINAAEYIMSQGNDQIILCERGIRTYETATRNTL--DISAVPILKQETHLPVFVDVTHST-------GRRDLLLPTAKAALAIGADGVMAEVHPDPSVALSDSAQQMAIPEFEKWLNELKPMVKVNA
1PCK Chain:A ((7-244))-------------------------------------------------------------------------------------------------------------------------IAGPCAIESEELLLKVGEEIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDIHESWQAEPVAEVADIIQIPAFLCRQTDLLLAAAKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGT----TFGYNNLVVDFRSLPIMKQWAK--VIYDATHSVQLPGGLG-MREFIFPLIRAAVAVGCDGVFMETHPEPEKALSDASTQLPLSQLE--------------


General information:
TITO was launched using:
RESULT:

Template: 1PCK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1149 11609 10.10 53.74
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 10.10
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.508

(partial model without unconserved sides chains):
PDB file : Tito_1PCK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PCK-query.scw
PDB file : Tito_Scwrl_1PCK.pdb: