Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATD-GNDRPTDPVVIESITIS
1ZKC Chain:A ((16-173))
----------PRGSGYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKH---------------YYDGTIFHRSIRNFVIQGGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD--VLTAMENVESDPKTDRPKEEIRIDATTV-
General information:
TITO was launched using:
RESULT:
Template:
1ZKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90135 for 1212 contacts (-74.4/contact) +
2D Compatibility (PS) -16429 + (NN) -9604 + (LL) -8
1D Compatibility (HY) -12400 + (ID) 3450
Total energy: -132026.0 ( -108.93 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_1ZKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZKC-query.scw
PDB file :
Tito_Scwrl_1ZKC.pdb
: