Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINP-VLETSEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1BS8 Chain:B ((1-146))
-SVLQVLHIPDERLRKVAKPVE-----EVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKS--GET-----GIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BS8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73011 for 1138 contacts (-64.2/contact) +
2D Compatibility (PS) -15721 + (NN) -3563 + (LL) 1676
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -108219.0 ( -95.10 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_1BS8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BS8-query.scw
PDB file :
Tito_Scwrl_1BS8.pdb
: