Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPLSGEYAPSPLDWSREQADTYMKSGGTEGTQLQGKPVILLTTVGAKTGKLRKTPLMRVEHDGQYAIVASLGGAPKNPVWYHNVVKNPRVELQDGTVT-GDYDAREVFGDEKAIWWQRAVAVWPDYASYQTKTDRQIPVFVLTPVRAGG
4Y9I Chain:A ((4-114))
--------------------------------VLDRPIVLFTTTGAKSGKKRYVPLMRVEENGKYAMVASKGGDPKHPSWYFNVKANPTVSVQDGDKVLPDRTARELEGEER-HWWKLAVEAYPPYAEYQTKTDRLIPVFIVE------
General information:
TITO was launched using:
RESULT:
Template:
4Y9I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52567 for 758 contacts (-69.3/contact) +
2D Compatibility (PS) -12045 + (NN) -7155 + (LL) 992
1D Compatibility (HY) -7200 + (ID) 3050
Total energy: -81025.0 ( -106.89 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_4Y9I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y9I-query.scw
PDB file :
Tito_Scwrl_4Y9I.pdb
: