Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
5AHW Chain:D ((2-147))
-SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFP--------------------QAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS
General information:
TITO was launched using:
RESULT:
Template:
5AHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67787 for 1035 contacts (-65.5/contact) +
2D Compatibility (PS) -13736 + (NN) -3692 + (LL) 1528
1D Compatibility (HY) -14800 + (ID) 5000
Total energy: -103487.0 ( -99.99 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_5AHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5AHW-query.scw
PDB file :
Tito_Scwrl_5AHW.pdb
: